We study the relationship between solutions to better-behaved GKZ hypergeometric systems near different large radius limit points, and their geometric counterparts given by the $K$-groups of the associated toric Deligne-Mumford stacks. We prove that the $K$-theoretic Fourier-Mukai transforms associated to toric wall-crossing coincide with analytic continuation transformations of Gamma series solutions to the better-behaved GKZ systems, which settles a conjecture of Borisov and Horja.

Comment: 20 pages, 1 figure; published version